| Karlsruher SC – Eintracht Frankfurt | 1:0 | (1:0) |
| FSV Frankfurt – Dynamo Dresden | 1:1 | (0:0) |
| TSV 1860 München – Alemannia Aachen | 1:2 | (1:2) |
| Energie Cottbus – 1. FC Union Berlin | 2:1 | (0:0) |
| Eintracht Braunschweig – FC Ingolstadt 04 | 3:1 | (1:1) |
| Erzgebirge Aue – VfL Bochum | 2:1 | (1:0) |
| Hansa Rostock – SpVgg Greuther Fürth | 2:2 | (0:1) |
| Fortuna Düsseldorf – MSV Duisburg | 2:2 | (2:2) |
| FC St. Pauli – SC Paderborn | 5:0 | (2:0) |
| 1. | (1.) | SpVgg Greuther Fürth | 34 | 20 | 10 | 4 | 73:27 | 46 | 70 |
| 2. | (2.) | Eintracht Frankfurt | 34 | 20 | 8 | 6 | 76:33 | 43 | 68 |
| 3. | (3.) | Fortuna Düsseldorf | 34 | 16 | 14 | 4 | 64:35 | 29 | 62 |
| 4. | (5.) | FC St. Pauli | 34 | 18 | 8 | 8 | 59:34 | 25 | 62 |
| 5. | (4.) | SC Paderborn | 34 | 17 | 10 | 7 | 51:42 | 9 | 61 |
| 6. | (6.) | TSV 1860 München | 34 | 17 | 6 | 11 | 62:46 | 16 | 57 |
| 7. | (7.) | 1. FC Union Berlin | 34 | 14 | 6 | 14 | 55:58 | -3 | 48 |
| 8. | (9.) | Eintracht Braunschweig | 34 | 10 | 15 | 9 | 37:35 | 2 | 45 |
| 9. | (8.) | Dynamo Dresden | 34 | 12 | 9 | 13 | 50:52 | -2 | 45 |
| 10. | (10.) | MSV Duisburg | 34 | 10 | 9 | 15 | 42:47 | -5 | 39 |
| 11. | (12.) | VfL Bochum | 34 | 10 | 7 | 17 | 41:55 | -14 | 37 |
| 12. | (11.) | FC Ingolstadt 04 | 34 | 8 | 13 | 13 | 43:58 | -15 | 37 |
| 13. | (13.) | FSV Frankfurt | 34 | 7 | 14 | 13 | 43:59 | -16 | 35 |
| 14. | (14.) | Energie Cottbus | 34 | 8 | 11 | 15 | 30:49 | -19 | 35 |
| 15. | (15.) | Erzgebirge Aue | 34 | 8 | 11 | 15 | 31:55 | -24 | 35 |
| 16. | (16.) | Karlsruher SC | 34 | 9 | 6 | 19 | 34:60 | -26 | 33 |
| 17. | (17.) | Alemannia Aachen | 34 | 6 | 13 | 15 | 30:47 | -17 | 31 |
| 18. | (18.) | Hansa Rostock | 34 | 5 | 12 | 17 | 34:63 | -29 | 27 |